jonathan.perreault

Toehold-mediated strand displacement to measure released product from self-cleaving ribozymes (2022) JB Kapadia, N Kharma, AN Davis, N Kamel, J Perreault. RNA 28 (2), 263-273

Small RNAs beyond Model Organisms: Have We Only Scratched the Surface? (2022) E Boutet, S Djerroud, J Perreault. International journal of molecular sciences 23 (8), 4448

Analysis of non-coding RNAs in Methylorubrum extorquens reveals a novel small RNA specific to Methylobacteriaceae (2022) E Boutet, S Djerroud, K Smail, MJ Lorain, M Wu, M Lamarche, R Imane, ... bioRxiv

Identification of 11 candidate structured noncoding RNA motifs in humans by comparative genomics (2021) L Hou, J Xie, Y Wu, J Wang, A Duan, Y Ao, X Liu, X Yu, H Yan, J Perreault, ... BMC genomics 22 (1), 1-14

Digital Microfluidics Chips for the Execution and Real-Time Monitoring of Multiple Ribozymatic Cleavage Reactions (2021) AN Davis, K Samlali, JB Kapadia, J Perreault, SCC Shih, N Kharma. ACS omega 6 (35), 22514-22524

Electrochemical characterization of graphene-type materials obtained by electrochemical exfoliation of graphite (2021) Y Lei, BD Ossonon, J Chen, J Perreault, AC Tavares. Journal of Electroanalytical Chemistry 887, 115084

A survey of cis regulatory non-coding RNA involved in bacterial virulence (2021) MR Naghdi, S Djerroud, K Smail, J Perreault. bioRxiv

High-sensitivity small-molecule detection of microcystin-LR cyano-toxin using a terahertz-aptamer biosensor (2021) A Mohamed, R Walsh, M Cherif, HA Hafez, X Ropagnol, F Vidal, ... Analyst 146 (24), 7583-7592

Fluoride-Controlled Riboswitch-Based Dampening of Gene Expression for Cloning Potent Promoters. (2021) V Korniakova, A Devinck, MC Groleau, E Déziel, J Perreault. Frontiers in genetics 12, 591543-591543

Real-time isothermal DNA amplification monitoring in picoliter volumes using an optical fiber sensor (2021) M Janik, SV Hamidi, M Koba, J Perreault, R Walsh, WJ Bock, M Śmietana. Lab on a Chip 21 (2), 397-404

Computer-Aided Design of Active Pseudoknotted Hammerhead Ribozymes (2021) S Najeh, K Zandi, S Djerroud, N Kharma, J Perreault. Ribozymes, 91-111

Novel strategies to optimize the amplification of single-stranded DNA (2021) A Nehdi, N Samman, V Aguilar-Sánchez, A Farah, E Yurdusev, ... Frontiers in Bioengineering and Biotechnology 8, 401

Single Mutation in Hammerhead Ribozyme Favors Cleavage Activity with Manganese over Magnesium (2020) MR Naghdi, E Boutet, C Mucha, J Ouellet, J Perreault. Non-coding RNA 6 (1), 14

An experimentally evolved variant of RsmA confirms its central role in the control of Pseudomonas aeruginosa social motility (2020) S Robitaille, YL de los Santos, MC Groleau, F Jean-Pierre, N Doucet, ... bioRxiv

Bioinspired carbohydrate-decorated long-period fiber grating for label-free bacteria detection (2019) A Celebanska, Y Chiniforooshan, M Janik, P Mikulic, B Sellamuthu, ... IEEE Sensors Journal 19 (24), 11965-11971

Gold coated dual-resonance long-period fiber gratings (DR-LPFG) based aptasensor for cyanobacterial toxin detection (2019) SM Tripathi, K Dandapat, WJ Bock, P Mikulic, J Perreault, B Sellamuthu. Sensing and Bio-Sensing Research 25, 100289

Simple rolling circle amplification colorimetric assay based on pH for target DNA detection (2019) SV Hamidi, J Perreault. Talanta 201, 419-425.

Label-free cocaine aptasensor based on a long-period fiber grating (2019) A Celebanska, Y Chiniforooshan, M Janik, P Mikulic, B Sellamuthu, ... Optics letters 44 (10), 2482-2485

RNA-Based Therapy Utilizing Oculopharyngeal Muscular Dystrophy Transcript Knockdown and Replacement (2019) A Abu-Baker, N Kharma, J Perreault, A Grant, M Shekarabi, C Maios, ... Molecular Therapy-Nucleic Acids 15, 12-25

Room-Temperature and Selective Triggering of Supramolecular DNA Assembly/Disassembly by Nonionizing Radiation (2019) GMA Greschner AA, Ropagnol X, Kort M, Zuberi N, Perreault J, Razzari L, Ozaki T. J Am Chem Soc. 141 ((8)), 3456-3469

Genetically engineered c1-utilizing microorganisms and processes for their production and use (2018) MG Lamarche, J Perreault, C Miguez, M Arbour, YJ Choi US Patent App. 15/566,579

Peptide modification results in the formation of a dimer with a 60-fold enhanced antimicrobial activity (2017) A Thamri, M Létourneau, A Djoboulian, D Chatenet, E Déziel, ... PloS one 12 (3), e0173783

Search for 5′-leader regulatory RNA structures based on gene annotation aided by the RiboGap database (2017) MR Naghdi, K Smail, JX Wang, F Wade, RR Breaker, J Perreault. Methods 117, 3-13

Transcriptional pausing at the translation start site operates as a critical checkpoint for riboswitch regulation (2017) A Chauvier, F Picard-Jean, JC Berger-Dancause, L Bastet, MR Naghdi, ... Nature communications 8 (1), 1-12

Automated design of hammerhead ribozymes and validation by targeting the PABPN1 gene transcript (2016) N Kharma, L Varin, A Abu-Baker, J Ouellet, S Najeh, MR Ehdaeivand, ... Nucleic acids research 44 (4), e39-e39

Complex autoregulation of the post-transcriptional regulator RsmA in Pseudomonas aeruginosa (2015) F Jean-Pierre, J Perreault, E Deziel. Microbiology 161 (9), 1889-1896

Aerobic sludge granulation in a reverse flow baffled reactor (RFBR) operated in continuous-flow mode for wastewater treatment (2015) J Li, A Cai, L Ding, B Sellamuthu, J Perreault. Separation and Purification Technology 149, 437-444

Finding instances of riboswitches and ribozymes by homology search of structured RNA with Infernal (2015) A El Korbi, J Ouellet, MR Naghdi, J Perreault. Therapeutic Applications of Ribozymes and Riboswitches, 113-126

Expression Strategy of Aedes albopictus Densovirus (2014) HT Pham, FX Jousset, J Perreault, H Shike, J Szelei, M Bergoin, P Tijssen. Journal of virology 87 (17), 9928-9932

Identification of quorum sensing‐controlled genes in Burkholderia ambifaria (2013) A Chapalain, L Vial, N Laprade, V Dekimpe, J Perreault, E Déziel. MicrobiologyOpen

The ubiquitous hammerhead ribozyme (2012) C Hammann, A Luptak, J Perreault, M De La Peña. RNA 18 (5), 871-885

Identification of hammerhead ribozymes in all domains of life reveals novel structural variations (2011) J Perreault, Z Weinberg, A Roth, O Popescu, P Chartrand, G Ferbeyre, ... PLoS computational biology 7 (5), e1002031

Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis (2009) Z Weinberg, J Perreault, MM Meyer, RR Breaker. Nature 462 (7273), 656-659

A novel structural rearrangement of hepatitis delta virus antigenomic ribozyme (2007) A Nehdi, J Perreault, JD Beaudoin, JP Perreault. Nucleic acids research 35 (20), 6820-6831

Ro-associated Y RNAs in metazoans: evolution and diversification (2007) J Perreault, JP Perreault, G Boire. Molecular biology and evolution 24 (8), 1678-1689

RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures (2007) JF Lucier, J Perreault, JF Noel, G Boire, JP Perreault. Nucleic acids research 35 (suppl_2), W269-W274

Characterization of the MCT-1 pseudogene: Identification and implication of its location in a highly amplified region of chromosome 20 (2006) S Nandi, B Shi, J Perreault, RB Gartenhaus. Biochimica et Biophysica Acta (BBA)-Gene Structure and Expression 1759

Retropseudogenes derived from the human Ro/SS-A autoantigen-associated hY RNAs (2005) J Perreault, JF Noel, F Briere, B Cousineau, JF Lucier, JP Perreault, ... Nucleic acids research 33 (6), 2032-2041

Formation of the P1. 1 pseudoknot is critical for both the cleavage activity and substrate specificity of an antigenomic trans‐acting hepatitis delta ribozyme (2003) P Deschênes, J Ouellet, J Perreault, JP Perreault. Nucleic acids research 31 (8), 2087-2096

SubViral RNA: a database of the smallest known auto-replicable RNA species (2003) M Pelchat, L Rocheleau, J Perreault, JP Perreault. Nucleic acids research 31 (1), 444-445